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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SED06913.1Protein of unknown function. (66 aa)    
Predicted Functional Partners:
SED06953.1
Uncharacterized membrane protein YccC.
 
   
 0.952
SED06857.1
RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
     0.885
SED06996.1
Efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family.
 
     0.804
SEB65501.1
Outer membrane porin, OprD family.
  
     0.706
SEB87875.1
Cytochrome c.
  
     0.613
SED07044.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
 
     0.599
SEB68423.1
Outer membrane porin, OprD family.
  
     0.586
SEB98826.1
Outer membrane porin, OprD family.
  
     0.575
SED05934.1
Motility quorum-sensing regulator / GCU-specific mRNA interferase toxin.
  
     0.537
SED59861.1
Uncharacterized membrane protein affecting hemolysin expression.
  
     0.534
Your Current Organism:
Pseudomonas taetrolens
NCBI taxonomy Id: 47884
Other names: ATCC 4683, CCUG 560, CFBP 5592, CIP 103299, JCM 20238, LMG 2336, LMG:2336, NCIB 9396, NCIB:9396, NCTC 10697, NRRL B-14, NRRL B-731, NRRL:B:14, NRRL:B:731, P. taetrolens, VKM B-904, VKM:B:904
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