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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SED14234.1Outer membrane usher protein FimD/PapC. (853 aa)    
Predicted Functional Partners:
SED14188.1
P pilus assembly protein, chaperone PapD.
 
 
 0.986
SED14331.1
Pilin (type 1 fimbria component protein).
 
 0.974
SED14285.1
Pilin (type 1 fimbria component protein); Manually curated.
  
 0.954
SEB99037.1
Pilin (type 1 fimbria component protein).
 
 0.937
SEB99158.1
Chaperone protein EcpD.
 
 
 0.937
SEC67661.1
P pilus assembly protein, chaperone PapD.
 
 
 0.937
SEC52342.1
Chaperone protein EcpD.
 
 
 0.933
SEC67802.1
Fimbrial chaperone protein.
 
 
 0.933
SED14146.1
Pilin (type 1 fimbria component protein).
  
 0.918
SEC67846.1
Major type 1 subunit fimbrin (pilin).
 
 0.895
Your Current Organism:
Pseudomonas taetrolens
NCBI taxonomy Id: 47884
Other names: ATCC 4683, CCUG 560, CFBP 5592, CIP 103299, JCM 20238, LMG 2336, LMG:2336, NCIB 9396, NCIB:9396, NCTC 10697, NRRL B-14, NRRL B-731, NRRL:B:14, NRRL:B:731, P. taetrolens, VKM B-904, VKM:B:904
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.