STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SED15993.1Uncharacterized protein involved in outer membrane biogenesis. (974 aa)    
Predicted Functional Partners:
SEB51815.1
Protein of unknown function VcgC/VcgE.
  
     0.664
SEC00084.1
Type II and III secretion system protein.
  
     0.634
SED15945.1
23S rRNA (cytosine1962-C5)-methyltransferase; Belongs to the methyltransferase superfamily.
       0.570
SEC95609.1
Arc-like DNA binding domain-containing protein.
  
     0.562
SEB45892.1
Hypothetical protein.
  
    0.554
SEB78734.1
Ubiquinone/menaquinone biosynthesis C-methylase UbiE.
  
     0.515
SED59910.1
Hypothetical protein.
  
    0.487
SEB75114.1
Beta-galactosidase.
  
     0.481
SED67140.1
SmpA / OmlA family protein.
  
     0.481
SEB94786.1
Membrane-bound lytic murein transglycosylase MltF.
  
     0.462
Your Current Organism:
Pseudomonas taetrolens
NCBI taxonomy Id: 47884
Other names: ATCC 4683, CCUG 560, CFBP 5592, CIP 103299, JCM 20238, LMG 2336, LMG:2336, NCIB 9396, NCIB:9396, NCTC 10697, NRRL B-14, NRRL B-731, NRRL:B:14, NRRL:B:731, P. taetrolens, VKM B-904, VKM:B:904
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