Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
SED54743.1Isopentenyldiphosphate isomerase. (180 aa)    
Predicted Functional Partners:
SED54780.1
Hypothetical protein.
  
    0.924
SED54702.1
Translation initiation factor 1 (eIF-1/SUI1).
  
    0.661
panC
Pantothenate synthetase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.
    
 
 0.620
SED04862.1
8-oxo-dGTP pyrophosphatase MutT, NUDIX family.
     
 0.599
nudF
ADP-ribose pyrophosphatase.
  
  
 0.599
nudJ
ADP-ribose pyrophosphatase YjhB, NUDIX family; Belongs to the Nudix hydrolase family. NudJ subfamily.
      
 0.595
SEC91922.1
8-oxo-dGTPase.
     
 0.593
nudC
NAD+ diphosphatase; Belongs to the Nudix hydrolase family. NudC subfamily.
      
 0.587
SED69857.1
ADP-ribose diphosphatase.
      
 0.587
SEC48919.1
Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily.
  
  
 0.586
Your Current Organism:
Pseudomonas taetrolens
NCBI taxonomy Id: 47884
Other names: ATCC 4683, CCUG 560, CFBP 5592, CIP 103299, JCM 20238, LMG 2336, LMG:2336, NCIB 9396, NCIB:9396, NCTC 10697, NRRL B-14, NRRL B-731, NRRL:B:14, NRRL:B:731, P. taetrolens, VKM B-904, VKM:B:904
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