STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALZ82759.1Na+-dependent transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (66 aa)    
Predicted Functional Partners:
ALZ82760.1
Fusaric acid resistance protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.951
ALZ82758.1
Efflux transporter periplasmic adaptor subunit; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
     0.918
ALZ86756.1
RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.897
ALZ86916.1
Fusaric acid resistance protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.795
ALZ83752.1
Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.704
ALZ86322.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.574
ALZ86134.1
Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.558
ALZ82761.1
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family.
 
     0.557
ALZ85770.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.555
ALZ85236.1
Virulence factor family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.530
Your Current Organism:
Pseudomonas oryzihabitans
NCBI taxonomy Id: 47885
Other names: AJ 2197, ATCC 43272, CCUG 12540, CIP 102996, DSM 6835, Flavimonas oryzihabitans, JCM 2952, LMG 7040, LMG:7040, NBRC 102199, P. oryzihabitans, group Ve-2, strain KS0036
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.