Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ALZ83276.1DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (480 aa)    
Predicted Functional Partners:
ALZ83277.1
Biotin synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.970
ALZ86703.1
uracil-DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.799
ALZ83279.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.509
ALZ83278.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.498
ALZ84327.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.485
ALZ84812.1
DNA topoisomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.479
oadA
Pyruvate carboxylase subunit B; Catalyzes the formation of oxaloacetate from pyruvate; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.450
Your Current Organism:
Pseudomonas oryzihabitans
NCBI taxonomy Id: 47885
Other names: AJ 2197, ATCC 43272, CCUG 12540, CIP 102996, DSM 6835, Flavimonas oryzihabitans, JCM 2952, LMG 7040, LMG:7040, NBRC 102199, P. oryzihabitans, group Ve-2, strain KS0036
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