Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ALZ82711.1 | ALZ83490.1 | APT59_00270 | APT59_04445 | DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.691 |
| ALZ83109.1 | ALZ83490.1 | APT59_02425 | APT59_04445 | RNA polymerase subunit sigma; Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. | Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.672 |
| ALZ83109.1 | ALZ83960.1 | APT59_02425 | APT59_06945 | RNA polymerase subunit sigma; Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. | RNA polymerase subunit sigma; Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in Pseudomonas fluorescens and P. aeruginosa regulates outer membrane protein OprF expression; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. | 0.739 |
| ALZ83490.1 | ALZ82711.1 | APT59_04445 | APT59_00270 | Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.691 |
| ALZ83490.1 | ALZ83109.1 | APT59_04445 | APT59_02425 | Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology. | RNA polymerase subunit sigma; Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. | 0.672 |
| ALZ83490.1 | ALZ83794.1 | APT59_04445 | APT59_06075 | Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology. | 2-alkenal reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.737 |
| ALZ83490.1 | ALZ83867.1 | APT59_04445 | APT59_06460 | Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology. | RNA polymerase subunit sigma; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. | 0.723 |
| ALZ83490.1 | ALZ83960.1 | APT59_04445 | APT59_06945 | Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology. | RNA polymerase subunit sigma; Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in Pseudomonas fluorescens and P. aeruginosa regulates outer membrane protein OprF expression; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. | 0.754 |
| ALZ83490.1 | ALZ84375.1 | APT59_04445 | APT59_09240 | Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology. | RNA polymerase subunit sigma; Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor regulates the genes for iron dicitrate transport; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. | 0.724 |
| ALZ83490.1 | ALZ84636.1 | APT59_04445 | APT59_10680 | Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology. | RNA polymerase subunit sigma; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. | 0.686 |
| ALZ83490.1 | ALZ85114.1 | APT59_04445 | APT59_13265 | Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 0.686 |
| ALZ83490.1 | ALZ86788.1 | APT59_04445 | APT59_04450 | Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology. | Serine peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S1C family. | 0.853 |
| ALZ83490.1 | rpoE | APT59_04445 | APT59_04440 | Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology. | RNA polymerase sigma factor RpoE; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. | 0.958 |
| ALZ83794.1 | ALZ83490.1 | APT59_06075 | APT59_04445 | 2-alkenal reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.737 |
| ALZ83867.1 | ALZ83490.1 | APT59_06460 | APT59_04445 | RNA polymerase subunit sigma; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. | Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.723 |
| ALZ83867.1 | ALZ85114.1 | APT59_06460 | APT59_13265 | RNA polymerase subunit sigma; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 0.755 |
| ALZ83960.1 | ALZ83109.1 | APT59_06945 | APT59_02425 | RNA polymerase subunit sigma; Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in Pseudomonas fluorescens and P. aeruginosa regulates outer membrane protein OprF expression; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. | RNA polymerase subunit sigma; Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. | 0.739 |
| ALZ83960.1 | ALZ83490.1 | APT59_06945 | APT59_04445 | RNA polymerase subunit sigma; Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in Pseudomonas fluorescens and P. aeruginosa regulates outer membrane protein OprF expression; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. | Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.754 |
| ALZ84375.1 | ALZ83490.1 | APT59_09240 | APT59_04445 | RNA polymerase subunit sigma; Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor regulates the genes for iron dicitrate transport; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. | Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.724 |
| ALZ84636.1 | ALZ83490.1 | APT59_10680 | APT59_04445 | RNA polymerase subunit sigma; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. | Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.686 |
page 1 of 2