Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ALZ82718.1 | ALZ83780.1 | APT59_00305 | APT59_06000 | Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon; Derived by automated computational analysis using gene prediction method: Protein Homology. | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.856 |
| ALZ83780.1 | ALZ82718.1 | APT59_06000 | APT59_00305 | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.856 |
| ALZ83780.1 | ALZ84899.1 | APT59_06000 | APT59_12120 | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.807 |
| ALZ83780.1 | ALZ85443.1 | APT59_06000 | APT59_15020 | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.909 |
| ALZ83780.1 | ALZ85978.1 | APT59_06000 | APT59_17890 | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.905 |
| ALZ83780.1 | ALZ85979.1 | APT59_06000 | APT59_17895 | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.953 |
| ALZ83780.1 | glnG | APT59_06000 | APT59_20480 | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Nitrogen regulation protein NR(I); Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. | 0.908 |
| ALZ83780.1 | rpoA | APT59_06000 | APT59_19945 | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.891 |
| ALZ83780.1 | rpoB | APT59_06000 | APT59_20105 | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.842 |
| ALZ83780.1 | rpoC | APT59_06000 | APT59_20100 | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.838 |
| ALZ83780.1 | rpoZ | APT59_06000 | APT59_21215 | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.829 |
| ALZ84899.1 | ALZ83780.1 | APT59_12120 | APT59_06000 | Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.807 |
| ALZ85443.1 | ALZ83780.1 | APT59_15020 | APT59_06000 | AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.909 |
| ALZ85978.1 | ALZ83780.1 | APT59_17890 | APT59_06000 | PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.905 |
| ALZ85978.1 | ALZ85979.1 | APT59_17890 | APT59_17895 | PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.993 |
| ALZ85979.1 | ALZ83780.1 | APT59_17895 | APT59_06000 | Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.953 |
| ALZ85979.1 | ALZ85978.1 | APT59_17895 | APT59_17890 | Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.993 |
| glnG | ALZ83780.1 | APT59_20480 | APT59_06000 | Nitrogen regulation protein NR(I); Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.908 |
| rpoA | ALZ83780.1 | APT59_19945 | APT59_06000 | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.891 |
| rpoA | rpoB | APT59_19945 | APT59_20105 | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.998 |
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