Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ALZ83109.1 | ALZ83490.1 | APT59_02425 | APT59_04445 | RNA polymerase subunit sigma; Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. | Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.672 |
| ALZ83109.1 | ALZ83960.1 | APT59_02425 | APT59_06945 | RNA polymerase subunit sigma; Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. | RNA polymerase subunit sigma; Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in Pseudomonas fluorescens and P. aeruginosa regulates outer membrane protein OprF expression; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. | 0.739 |
| ALZ83109.1 | ALZ85110.1 | APT59_02425 | APT59_13245 | RNA polymerase subunit sigma; Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. | Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.713 |
| ALZ83109.1 | ALZ85214.1 | APT59_02425 | APT59_13800 | RNA polymerase subunit sigma; Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. | ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.517 |
| ALZ83109.1 | rpoC | APT59_02425 | APT59_20100 | RNA polymerase subunit sigma; Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.483 |
| ALZ83467.1 | ALZ83959.1 | APT59_04325 | APT59_06940 | GlcNAc-PI de-N-acetylase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.690 |
| ALZ83467.1 | ALZ83960.1 | APT59_04325 | APT59_06945 | GlcNAc-PI de-N-acetylase; Derived by automated computational analysis using gene prediction method: Protein Homology. | RNA polymerase subunit sigma; Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in Pseudomonas fluorescens and P. aeruginosa regulates outer membrane protein OprF expression; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. | 0.605 |
| ALZ83467.1 | ALZ83961.1 | APT59_04325 | APT59_06950 | GlcNAc-PI de-N-acetylase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Porin; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.624 |
| ALZ83490.1 | ALZ83109.1 | APT59_04445 | APT59_02425 | Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology. | RNA polymerase subunit sigma; Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. | 0.672 |
| ALZ83490.1 | ALZ83960.1 | APT59_04445 | APT59_06945 | Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology. | RNA polymerase subunit sigma; Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in Pseudomonas fluorescens and P. aeruginosa regulates outer membrane protein OprF expression; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. | 0.754 |
| ALZ83957.1 | ALZ83958.1 | APT59_06930 | APT59_06935 | CmaX protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | CrfX protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.646 |
| ALZ83957.1 | ALZ83959.1 | APT59_06930 | APT59_06940 | CmaX protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.792 |
| ALZ83957.1 | ALZ83960.1 | APT59_06930 | APT59_06945 | CmaX protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | RNA polymerase subunit sigma; Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in Pseudomonas fluorescens and P. aeruginosa regulates outer membrane protein OprF expression; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. | 0.540 |
| ALZ83957.1 | ALZ83961.1 | APT59_06930 | APT59_06950 | CmaX protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Porin; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.423 |
| ALZ83958.1 | ALZ83957.1 | APT59_06935 | APT59_06930 | CrfX protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | CmaX protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.646 |
| ALZ83958.1 | ALZ83959.1 | APT59_06935 | APT59_06940 | CrfX protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.914 |
| ALZ83958.1 | ALZ83960.1 | APT59_06935 | APT59_06945 | CrfX protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | RNA polymerase subunit sigma; Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in Pseudomonas fluorescens and P. aeruginosa regulates outer membrane protein OprF expression; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. | 0.676 |
| ALZ83958.1 | ALZ83961.1 | APT59_06935 | APT59_06950 | CrfX protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Porin; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.481 |
| ALZ83959.1 | ALZ83467.1 | APT59_06940 | APT59_04325 | Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. | GlcNAc-PI de-N-acetylase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.690 |
| ALZ83959.1 | ALZ83957.1 | APT59_06940 | APT59_06930 | Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. | CmaX protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.792 |
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