STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALZ84473.1Hypothetical protein; Binds to the HflBKC complex which modulates FtsH activity; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the BI1 family. (222 aa)    
Predicted Functional Partners:
ALZ84471.1
Sulfur relay protein TusC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.705
ALZ84469.1
Sulfur relay protein TusE; Part of a sulfur-relay system.
     
 0.687
ALZ84468.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.665
dsrH
Sulfur relay protein DsrH; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.665
ALZ84472.1
Sulfurtransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.665
ALZ84467.1
Glutathione-dependent reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.538
htpX
Zinc metalloprotease HtpX; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase M48B family.
  
  
 0.520
mreD
Rod shape-determining protein MreD; Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins. Belongs to the MreD family.
  
     0.517
ALZ85001.1
Colicin V production CvpA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.515
bamE
Hypothetical protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
    0.504
Your Current Organism:
Pseudomonas oryzihabitans
NCBI taxonomy Id: 47885
Other names: AJ 2197, ATCC 43272, CCUG 12540, CIP 102996, DSM 6835, Flavimonas oryzihabitans, JCM 2952, LMG 7040, LMG:7040, NBRC 102199, P. oryzihabitans, group Ve-2, strain KS0036
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