STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALZ84508.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (116 aa)    
Predicted Functional Partners:
ALZ84509.1
Head-tail adaptor protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.913
ALZ84504.1
Phage portal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.846
ALZ84506.1
Capsid protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.804
ALZ84507.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.791
ALZ84505.1
Prohead protease; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.686
ALZ84503.1
Terminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.640
ALZ84502.1
Terminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.626
ALZ86830.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.573
ALZ84510.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.573
ALZ84511.1
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.465
Your Current Organism:
Pseudomonas oryzihabitans
NCBI taxonomy Id: 47885
Other names: AJ 2197, ATCC 43272, CCUG 12540, CIP 102996, DSM 6835, Flavimonas oryzihabitans, JCM 2952, LMG 7040, LMG:7040, NBRC 102199, P. oryzihabitans, group Ve-2, strain KS0036
Server load: high (84%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.