STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALZ86842.1Toprim domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (942 aa)    
Predicted Functional Partners:
ALZ84697.1
Capsid protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.784
ALZ84694.1
Presumed portal vertex protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.776
ALZ84696.1
Phage capsid protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.772
ALZ84698.1
Terminase; gpM; M protein; capsid packaging; M protein is probably the endonuclease subunit of the terminase complex, which directs cos cleavage of closed monomeric dsDNA circles into linear genomes with 19 nt cohesive ssDNA ends; Q, P and M proteins are needed to package DNA into capsid proheads and conversion into mature capsids; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.772
ALZ84695.1
Terminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.771
ALZ84699.1
Head completion/stabilization protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.768
ALZ84704.1
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.763
ALZ84718.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.761
ALZ86285.1
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily.
  
 
 0.761
ALZ84719.1
Late control protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.760
Your Current Organism:
Pseudomonas oryzihabitans
NCBI taxonomy Id: 47885
Other names: AJ 2197, ATCC 43272, CCUG 12540, CIP 102996, DSM 6835, Flavimonas oryzihabitans, JCM 2952, LMG 7040, LMG:7040, NBRC 102199, P. oryzihabitans, group Ve-2, strain KS0036
Server load: medium (54%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.