STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALZ85785.1Lipoprotein UxpA; Derived by automated computational analysis using gene prediction method: Protein Homology. (556 aa)    
Predicted Functional Partners:
ALZ85784.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.857
ALZ85783.1
Type II secretion system protein GspD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.835
ALZ85782.1
Type II secretion system protein GspE; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.809
ALZ85779.1
Type II secretion system protein GspH; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.772
ALZ85781.1
Type II secretion system protein GspF; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.759
ALZ85780.1
Type II secretion system protein GspG; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.720
ALZ85774.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.683
ALZ85776.1
General secretion pathway protein GspL; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.683
ALZ85777.1
Type II secretion pathway protein XcpW; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.683
ALZ85775.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.641
Your Current Organism:
Pseudomonas oryzihabitans
NCBI taxonomy Id: 47885
Other names: AJ 2197, ATCC 43272, CCUG 12540, CIP 102996, DSM 6835, Flavimonas oryzihabitans, JCM 2952, LMG 7040, LMG:7040, NBRC 102199, P. oryzihabitans, group Ve-2, strain KS0036
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.