STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALZ86470.1Hemolysin secretion protein D; Derived by automated computational analysis using gene prediction method: Protein Homology. (441 aa)    
Predicted Functional Partners:
ALZ86471.1
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.973
ALZ86930.1
Type I secretion protein TolC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.863
ALZ85214.1
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.647
ALZ85903.1
Channel protein TolC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.601
ALZ85110.1
Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.534
ALZ86756.1
RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.519
ALZ82884.1
RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.519
ALZ83303.1
Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.519
ALZ84761.1
RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.519
ALZ85070.1
RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.519
Your Current Organism:
Pseudomonas oryzihabitans
NCBI taxonomy Id: 47885
Other names: AJ 2197, ATCC 43272, CCUG 12540, CIP 102996, DSM 6835, Flavimonas oryzihabitans, JCM 2952, LMG 7040, LMG:7040, NBRC 102199, P. oryzihabitans, group Ve-2, strain KS0036
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.