STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALZ86693.1Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (499 aa)    
Predicted Functional Partners:
ALZ86692.1
ClpV1 family T6SS ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.792
ALZ83780.1
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.783
ALZ84910.1
Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.773
ALZ86687.1
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.732
ALZ86688.1
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.732
ALZ86689.1
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.732
ALZ86690.1
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.732
ALZ86691.1
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.732
ALZ86686.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.640
ALZ85214.1
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.586
Your Current Organism:
Pseudomonas oryzihabitans
NCBI taxonomy Id: 47885
Other names: AJ 2197, ATCC 43272, CCUG 12540, CIP 102996, DSM 6835, Flavimonas oryzihabitans, JCM 2952, LMG 7040, LMG:7040, NBRC 102199, P. oryzihabitans, group Ve-2, strain KS0036
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.