STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AM587_10001280Choline dehydrogenase. (584 aa)    
Predicted Functional Partners:
AM587_10006655
Intraflagellar Transport Protein 52.
    
 0.827
AM587_10017621
Aldehyde dehydrogenase family 7 member A1; Belongs to the aldehyde dehydrogenase family.
   
 
 0.824
AM587_10012895
Tetratricopeptide repeat protein 30A.
    
 0.812
AM587_10009539
Intraflagellar Transport Protein 81.
    
 0.807
AM587_10005172
Intraflagellar Transport Protein 88.
    
 0.798
AM587_10015378
Intraflagellar transport protein.
    
 0.786
AM587_10007629
Intraflagellar Transport protein 80.
    
 0.786
AM587_10014452
Clusterin-associated protein 1.
    
 0.782
AM587_10013443
Calcium-binding protein CML8.
    
 0.758
AM587_10008272
Phosphatidylserine decarboxylase proenzyme.
     
 0.756
Your Current Organism:
Phytophthora nicotianae
NCBI taxonomy Id: 4790
Other names: P. nicotianae, buckeye rot agent
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.