STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AM587_10010431Polyadenylate-binding protein 2. (225 aa)    
Predicted Functional Partners:
AM587_10000153
Cleavage stimulation factor subunit 2.
  
 
0.988
AM587_10009937
Eukaryotic initiation factor 4A-III; Belongs to the DEAD box helicase family.
   
 0.977
AM587_10006605
Regulator of nonsense transcripts 2.
    
 0.975
AM587_10010811
Histone deacetylase complex subunit SAP18.
   
 0.975
AM587_10010713
PWI domain-containing protein.
   
 0.969
AM587_10010334
RNA-binding protein 8A.
    
 0.960
AM587_10009775
Aly/REF export factor 2.
  
 0.948
AM587_10013726
Pre-mRNA polyadenylation factor fip1.
    
 0.937
AM587_10008515
Serine/arginine-rich splicing factor 4.
  
 0.932
AM587_10004036
U1 small nuclear ribonucleoprotein 70 kDa.
  
 0.916
Your Current Organism:
Phytophthora nicotianae
NCBI taxonomy Id: 4790
Other names: P. nicotianae, buckeye rot agent
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.