STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AM587_10003174E3 ubiquitin-protein ligase MARCH8. (477 aa)    
Predicted Functional Partners:
AM587_10004971
NOT transcription complex subunit VIP2.
    
 
 0.871
AM587_10005028
FAS-associated factor 2-B.
    
 
 0.868
AM587_10012281
Ubiquitin-conjugating enzyme E2 33.
    
 
 0.606
AM587_10012280
Ubiquitin-conjugating enzyme E2 J2.
    
 
 0.606
AM587_10012964
Peptidylprolyl isomerase.
    
 
 0.599
AM587_10008083
Peptidylprolyl isomerase.
    
 
 0.599
AM587_10008088
NPL domain-containing protein.
    
 
 0.599
AM587_10004898
FK506-binding protein.
    
 
 0.599
AM587_10009461
NPL domain-containing protein.
    
 
 0.599
AM587_10012639
ATPase.
    
 
 0.531
Your Current Organism:
Phytophthora nicotianae
NCBI taxonomy Id: 4790
Other names: P. nicotianae, buckeye rot agent
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.