STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AM587_10008865Uncharacterized protein. (718 aa)    
Predicted Functional Partners:
AM587_10006744
Splicing factor 3B subunit 1.
   
 
 0.733
AM587_10009673
Regulator of nonsense transcripts 1.
    
   0.713
AM587_10002913
Regulator of nonsense transcripts 1.
    
   0.713
AM587_10011152
Myb-binding protein 1A protein.
     
 0.694
AM587_10008212
B-block_TFIIIC domain-containing protein.
    
 0.629
AM587_10017397
MPN domain-containing protein.
    
 0.629
AM587_10017372
Histone H3.
    
  0.612
AM587_10017047
Histone H3.
    
  0.612
AM587_10012523
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
  0.598
AM587_10015390
Histone acetyltransferase GCN5.
    
  0.588
Your Current Organism:
Phytophthora nicotianae
NCBI taxonomy Id: 4790
Other names: P. nicotianae, buckeye rot agent
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.