AM587_10009190 protein (Phytophthora nicotianae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AM587_10009190

Histone-lysine N-methyltransferase setd3. (439 aa)

Predicted Functional Partners:

AM587_10006043

0.590

AM587_10005227

0.590

AM587_10006301

0.590

AM587_10007636

0.589

AM587_10008756

0.517

AM587_10011807

0.497

AM587_10007583

0.427

Your Current Organism:

Phytophthora nicotianae

NCBI taxonomy Id: 4790
Other names: P. nicotianae, buckeye rot agent

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AM587_10005227	AM587_10009190	A0A0W8CE51	A0A0W8BXT7	Methylmalonic aciduria type A.	Histone-lysine N-methyltransferase setd3.	0.590
AM587_10006043	AM587_10009190	A0A0W8CD84	A0A0W8BXT7	Methylmalonic aciduria type A.	Histone-lysine N-methyltransferase setd3.	0.590
AM587_10006301	AM587_10009190	A0A0W8CG33	A0A0W8BXT7	FAM63A protein.	Histone-lysine N-methyltransferase setd3.	0.590
AM587_10007583	AM587_10009190	A0A0W8C3S3	A0A0W8BXT7	Histone-lysine N-methyltransferase SETD1B-A.	Histone-lysine N-methyltransferase setd3.	0.427
AM587_10007636	AM587_10008756	A0A0W8E0I8	A0A0W8DV71	ATP-citrate synthase; In the C-terminal section; belongs to the succinate/malate CoA ligase alpha subunit family.	Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of ATP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.	0.999
AM587_10007636	AM587_10009190	A0A0W8E0I8	A0A0W8BXT7	ATP-citrate synthase; In the C-terminal section; belongs to the succinate/malate CoA ligase alpha subunit family.	Histone-lysine N-methyltransferase setd3.	0.589
AM587_10007636	AM587_10011807	A0A0W8E0I8	A0A0W8CZZ2	ATP-citrate synthase; In the C-terminal section; belongs to the succinate/malate CoA ligase alpha subunit family.	Citrate synthase; Belongs to the citrate synthase family.	0.998
AM587_10008756	AM587_10007636	A0A0W8DV71	A0A0W8E0I8	Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of ATP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.	ATP-citrate synthase; In the C-terminal section; belongs to the succinate/malate CoA ligase alpha subunit family.	0.999
AM587_10008756	AM587_10009190	A0A0W8DV71	A0A0W8BXT7	Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of ATP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.	Histone-lysine N-methyltransferase setd3.	0.517
AM587_10008756	AM587_10011807	A0A0W8DV71	A0A0W8CZZ2	Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of ATP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.	Citrate synthase; Belongs to the citrate synthase family.	0.951
AM587_10009190	AM587_10005227	A0A0W8BXT7	A0A0W8CE51	Histone-lysine N-methyltransferase setd3.	Methylmalonic aciduria type A.	0.590
AM587_10009190	AM587_10006043	A0A0W8BXT7	A0A0W8CD84	Histone-lysine N-methyltransferase setd3.	Methylmalonic aciduria type A.	0.590
AM587_10009190	AM587_10006301	A0A0W8BXT7	A0A0W8CG33	Histone-lysine N-methyltransferase setd3.	FAM63A protein.	0.590
AM587_10009190	AM587_10007583	A0A0W8BXT7	A0A0W8C3S3	Histone-lysine N-methyltransferase setd3.	Histone-lysine N-methyltransferase SETD1B-A.	0.427
AM587_10009190	AM587_10007636	A0A0W8BXT7	A0A0W8E0I8	Histone-lysine N-methyltransferase setd3.	ATP-citrate synthase; In the C-terminal section; belongs to the succinate/malate CoA ligase alpha subunit family.	0.589
AM587_10009190	AM587_10008756	A0A0W8BXT7	A0A0W8DV71	Histone-lysine N-methyltransferase setd3.	Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of ATP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.	0.517
AM587_10009190	AM587_10011807	A0A0W8BXT7	A0A0W8CZZ2	Histone-lysine N-methyltransferase setd3.	Citrate synthase; Belongs to the citrate synthase family.	0.497
AM587_10011807	AM587_10007636	A0A0W8CZZ2	A0A0W8E0I8	Citrate synthase; Belongs to the citrate synthase family.	ATP-citrate synthase; In the C-terminal section; belongs to the succinate/malate CoA ligase alpha subunit family.	0.998
AM587_10011807	AM587_10008756	A0A0W8CZZ2	A0A0W8DV71	Citrate synthase; Belongs to the citrate synthase family.	Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of ATP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.	0.951
AM587_10011807	AM587_10009190	A0A0W8CZZ2	A0A0W8BXT7	Citrate synthase; Belongs to the citrate synthase family.	Histone-lysine N-methyltransferase setd3.	0.497