STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AM587_10014291Chromatin accessibility complex protein 1. (1124 aa)    
Predicted Functional Partners:
AM587_10013050
Dynein assembly factor 3.
   
 0.671
AM587_10001910
DNA repair protein.
    
 0.649
AM587_10016753
WD repeat-containing protein 90.
    
 
 0.620
AM587_10012434
Uncharacterized protein.
    
  0.609
AM587_10016459
Beta-adrenergic receptor kinase 1.
    
 0.590
AM587_10004502
Calcium/calmodulin-dependent protein kinase type II subunit alpha.
    
 0.587
AM587_10008062
Calcium/calmodulin-dependent protein kinase II; Belongs to the protein kinase superfamily.
    
 0.587
AM587_10014536
Calcium/calmodulin-dependent protein kinase type II delta 1 chain.
    
 0.587
AM587_10008511
Ras-related protein Rac1.
   
 0.585
AM587_10005988
Ankyrin repeat and protein kinase domain-containing protein 1.
    
 0.547
Your Current Organism:
Phytophthora nicotianae
NCBI taxonomy Id: 4790
Other names: P. nicotianae, buckeye rot agent
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