STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AM587_10009830Uncharacterized protein. (343 aa)    
Predicted Functional Partners:
AM587_10016723
Transcription initiation factor TFIID subunit 6.
    
 0.958
AM587_10014217
Transcription initiation factor TFIID subunit 12.
   
 0.954
AM587_10007407
Transcription initiation factor TFIID subunit 2.
    
 0.953
AM587_10014300
Transcription initiation factor TFIID subunit 7.
    
 0.953
AM587_10010360
Transcription initiation factor TFIID subunit 9.
    
 0.953
AM587_10007919
Transcription initiation factor TFIID subunit 3.
    
 0.953
AM587_10010462
Transcription initiation factor TFIID subunit 10.
    
 0.953
AM587_10007172
CDK-activating kinase assembly factor MAT1.
   
 0.876
AM587_10015159
Transcription initiation factor TFIID subunit 5.
    
 0.866
AM587_10010414
Uncharacterized protein.
    
 0.866
Your Current Organism:
Phytophthora nicotianae
NCBI taxonomy Id: 4790
Other names: P. nicotianae, buckeye rot agent
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.