STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AM587_10014573Apt1 domain-containing protein. (768 aa)    
Predicted Functional Partners:
AM587_10009454
Translation initiation factor IF-2.
    
 0.744
AM587_10017006
Translation initiation factor IF-2.
    
 0.744
AM587_10009866
28S ribosomal protein S29.
    
 0.729
AM587_10014597
30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
    
 0.715
AM587_10003721
30S ribosomal protein S16.
    
  0.696
AM587_10006405
30S ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.
   
  0.696
AM587_10009773
Eukaryotic translation initiation factor 5B.
    
 0.617
AM587_10011073
40S ribosomal protein S20.
    
  0.552
AM587_10014558
40S ribosomal protein S29.
    
 0.541
AM587_10009532
HEAT repeat-containing protein 1; Belongs to the universal ribosomal protein uS15 family.
    
  0.525
Your Current Organism:
Phytophthora nicotianae
NCBI taxonomy Id: 4790
Other names: P. nicotianae, buckeye rot agent
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