STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AM587_10011186Glycine--tRNA ligase. (487 aa)    
Predicted Functional Partners:
AM587_10016845
Eukaryotic translation elongation factor 1 epsilon-1.
  
 
 0.860
AM587_10017211
Tyrosine--tRNA ligase.
  
 
 0.860
AM587_10007269
Leucine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.791
AM587_10006154
Leucine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.760
AM587_10007753
Alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain. Belongs to the class-II aminoacyl-tRNA synthetase family.
  
 
 0.750
AM587_10015624
Alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain. Belongs to the class-II aminoacyl-tRNA synthetase family.
  
 
 0.750
AM587_10002649
Tyrosine--tRNA ligase.
  
  
 0.747
AM587_10011139
Cytidine deaminase.
  
    0.739
AM587_10015602
Bifunctional glutamate/proline--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.734
AM587_10011014
Isoleucine--tRNA ligase.
  
 
 0.729
Your Current Organism:
Phytophthora nicotianae
NCBI taxonomy Id: 4790
Other names: P. nicotianae, buckeye rot agent
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.