STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AM587_10009919Cathepsin L; Belongs to the peptidase C1 family. (504 aa)    
Predicted Functional Partners:
AM587_10005419
Cathepsin cysteine protease; Belongs to the peptidase C1 family.
  
  
 
0.858
AM587_10009918
Cathepsin L; Belongs to the peptidase C1 family.
  
  
 
0.826
AM587_10017671
Cysteine proteinase RD21a; Belongs to the peptidase C1 family.
  
0.658
AM587_10011296
Cathepsin D; Belongs to the peptidase A1 family.
   
 0.626
AM587_10013118
Cysteine protease.
   
 
 0.589
AM587_10009920
Oryzain beta chain; Belongs to the peptidase C1 family.
  
0.585
AM587_10007904
Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.
    
 0.499
AM587_10014278
Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.
     
 0.485
AM587_10016984
Proactivator polypeptide.
   
 
 0.480
AM587_10017723
Transport protein Sec31A protein.
     
 0.478
Your Current Organism:
Phytophthora nicotianae
NCBI taxonomy Id: 4790
Other names: P. nicotianae, buckeye rot agent
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.