STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AM587_10011053Uncharacterized protein. (648 aa)    
Predicted Functional Partners:
AM587_10009349
E3 ubiquitin ligase complex SCF subunit scon-3; Belongs to the SKP1 family.
    
 0.562
AM587_10013740
E3 ubiquitin ligase complex SCF subunit scon-3; Belongs to the SKP1 family.
    
 0.562
AM587_10000821
Uncharacterized protein.
    
 0.562
AM587_10017398
Eukaryotic translation initiation factor 3 subunit D-1; Belongs to the SKP1 family.
    
 0.562
AM587_10015539
SKP1 protein 20; Belongs to the SKP1 family.
    
 0.562
AM587_10014249
Lipase_3 domain-containing protein.
    
  0.557
AM587_10011219
Cullin-1; Belongs to the cullin family.
    
  0.557
AM587_10010736
RAC family serine/threonine-protein kinase; Belongs to the cullin family.
    
  0.557
AM587_10004268
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
    
 
 0.416
Your Current Organism:
Phytophthora nicotianae
NCBI taxonomy Id: 4790
Other names: P. nicotianae, buckeye rot agent
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