STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AM587_10005056DNA ligase. (969 aa)    
Predicted Functional Partners:
AM587_10010534
X-ray repair cross-complementing protein 5.
  
 0.957
AM587_10012747
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
   
 0.936
AM587_10001375
X-ray repair cross-complementing protein 5.
  
 0.918
AM587_10005696
Ku_PK_bind domain-containing protein.
   
 0.899
AM587_10011787
Cyclin-P3-1.
    
 0.854
AM587_10015948
DNA cross-link repair protein SNM1.
   
 0.803
AM587_10010037
Phosphatidylinositol kinase; Belongs to the PI3/PI4-kinase family.
    
 0.716
AM587_10012990
Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family.
    
 0.716
AM587_10016588
DNA-dependent protein kinase catalytic subunit; Belongs to the PI3/PI4-kinase family.
    
 0.716
AM587_10015793
Phosphatidylinositol kinase (PIK-L1); Belongs to the PI3/PI4-kinase family.
    
 0.716
Your Current Organism:
Phytophthora nicotianae
NCBI taxonomy Id: 4790
Other names: P. nicotianae, buckeye rot agent
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.