STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AM587_10005669General transcription factor IIH subunit 5. (219 aa)    
Predicted Functional Partners:
AM587_10005814
General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.
    
 0.967
AM587_10015150
General transcription factor IIH subunit 2.
    
 0.935
AM587_10015440
TFIIH basal transcription factor complex helicase XPB subunit.
    
 0.935
AM587_10003158
General transcription factor IIE subunit 2.
    
  0.928
AM587_10002903
General transcription factor IIE subunit 1.
    
  0.928
AM587_10008402
General transcription factor IIH subunit 1.
    
 0.914
AM587_10007172
CDK-activating kinase assembly factor MAT1.
    
 0.893
AM587_10010143
DNA repair helicase UVH6.
    
 0.872
AM587_10009544
DNA-directed RNA polymerases II.
    
  0.777
AM587_10013440
Transcription initiation factor IIF subunit beta.
    
  0.777
Your Current Organism:
Phytophthora nicotianae
NCBI taxonomy Id: 4790
Other names: P. nicotianae, buckeye rot agent
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.