STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AM587_10003680Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (417 aa)    
Predicted Functional Partners:
AM587_10017796
F-box/WD repeat-containing protein TBL1X.
    
 0.914
AM587_10012938
Histone-binding protein RBBP7.
   
 0.883
AM587_10012937
Histone-binding protein RBBP4.
   
 0.883
AM587_10015852
Metastasis-associated protein MTA3.
    
 0.865
AM587_10007330
Retinoblastoma-associated protein.
    
 0.857
AM587_10010285
Chromatin modification-related protein eaf3.
    
 0.828
AM587_10002741
Chromatin modification-related protein eaf3.
    
 0.828
AM587_10017548
Homeobox protein HAT3.1.
    
 
 0.820
AM587_10015803
Homeobox protein HAT3.1.
    
 
 0.820
AM587_10009621
PHD-type domain-containing protein.
    
 0.804
Your Current Organism:
Phytophthora nicotianae
NCBI taxonomy Id: 4790
Other names: P. nicotianae, buckeye rot agent
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.