STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AM587_10014044Vesicle-trafficking protein SEC22b; Belongs to the synaptobrevin family. (223 aa)    
Predicted Functional Partners:
AM587_10015417
Membrin-11.
    
 0.997
AM587_10014278
Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.
   
 0.997
AM587_10016113
Transport protein Sec24.
    
 0.996
AM587_10001941
Alpha-soluble NSF attachment protein.
   
 0.995
AM587_10014908
Synaptobrevin protein; Belongs to the synaptobrevin family.
    
0.994
AM587_10016064
Bet1 SNARE 1-2.
    
 0.991
AM587_10000734
Vesicle transport protein USE1.
    
 0.991
AM587_10007863
Syntaxin-18.
   
 0.987
AM587_10017016
SEC1 family transporter SLY1; Belongs to the STXBP/unc-18/SEC1 family.
    
 0.986
AM587_10009415
Syntaxin-31.
   
 0.985
Your Current Organism:
Phytophthora nicotianae
NCBI taxonomy Id: 4790
Other names: P. nicotianae, buckeye rot agent
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