STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AM587_10006284Uncharacterized protein. (679 aa)    
Predicted Functional Partners:
AM587_10016845
Eukaryotic translation elongation factor 1 epsilon-1.
   
 0.729
AM587_10017211
Tyrosine--tRNA ligase.
   
 0.729
AM587_10006544
Elongation factor 1-delta.
   
 0.637
AM587_10009544
DNA-directed RNA polymerases II.
   
   0.531
AM587_10009227
DNA-directed RNA polymerases I and III subunit RPAC1.
   
   0.531
AM587_10005589
Uncharacterized protein.
   
 0.484
AM587_10002641
Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
   
 0.484
AM587_10014242
Homogentisate 1.
   
 
 0.448
AM587_10007951
40S ribosomal protein S30.
   
   0.430
AM587_10013622
Acylpyruvase FAHD1.
   
 
 0.418
Your Current Organism:
Phytophthora nicotianae
NCBI taxonomy Id: 4790
Other names: P. nicotianae, buckeye rot agent
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.