STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AM587_10015756Elicitor transglutaminase M81 protein. (613 aa)    
Predicted Functional Partners:
AM587_10008868
Nitrate reductase.
    
 0.785
AM587_10015448
Nitrate reductase; Belongs to the cytochrome b5 family.
    
 0.785
AM587_10013475
U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.
    
  0.603
AM587_10008905
DDB1-and CUL4-associated factor 13.
    
  0.603
AM587_10012466
Nucleolar complex protein 4.
    
  0.603
AM587_10011079
rRNA-processing protein FCF1.
    
  0.603
AM587_10006718
40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.
    
  0.603
AM587_10010737
U3 small nucleolar RNA-associated protein 7.
    
  0.595
AM587_10011164
Ubiquitin carboxyl-terminal hydrolase.
    
  0.594
AM587_10004528
40S ribosomal protein S9-1; Belongs to the universal ribosomal protein uS4 family.
    
  0.589
Your Current Organism:
Phytophthora nicotianae
NCBI taxonomy Id: 4790
Other names: P. nicotianae, buckeye rot agent
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