STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AM587_10008069Coiled-coil domain-containing protein 94. (285 aa)    
Predicted Functional Partners:
AM587_10012745
Pre-mRNA-processing factor 17.
    
 0.995
AM587_10003619
Pre-mRNA-splicing factor CWC25 protein.
   
 0.993
AM587_10017507
Pre-mRNA-splicing factor syf2.
    
 0.988
AM587_10013294
Nucampholin.
    
 0.988
AM587_10013615
Cell division cycle 5 protein.
    
 
 0.985
AM587_10012934
Pre-mRNA-splicing factor SYF1.
    
 
 0.985
AM587_10002672
Pre-mRNA-splicing factor prp46.
    
 
 0.985
AM587_10005031
SNW domain-containing protein 1.
    
 
 0.977
AM587_10009045
Pre-mRNA-processing-splicing factor 8.
    
 
 0.965
AM587_10013893
S-adenosylmethionine decarboxylase proenzyme.
    
 
 0.964
Your Current Organism:
Phytophthora nicotianae
NCBI taxonomy Id: 4790
Other names: P. nicotianae, buckeye rot agent
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.