STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AM587_10016638Chitinase domain-containing protein 1; Belongs to the glycosyl hydrolase 18 family. (409 aa)    
Predicted Functional Partners:
AM587_10016753
WD repeat-containing protein 90.
    
   0.804
AM587_10004992
Dynein heavy chain.
    
 
 0.705
AM587_10001514
EF-hand domain-containing family member B.
    
   0.688
AM587_10010264
Double-strand-break repair protein rad21.
    
 
 0.648
AM587_10010265
Uncharacterized protein.
    
 
 0.648
AM587_10010181
Coatomer subunit epsilon; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. The coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. Belongs to the COPE family.
   
    0.608
AM587_10013607
Coiled-coil domain-containing protein 63.
    
 
 0.606
AM587_10006482
Coiled-coil domain-containing protein 63.
    
 
 0.606
AM587_10002619
Tubulin epsilon chain; Belongs to the tubulin family.
    
   0.588
AM587_10007958
Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.
    
   0.588
Your Current Organism:
Phytophthora nicotianae
NCBI taxonomy Id: 4790
Other names: P. nicotianae, buckeye rot agent
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.