STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AM587_10014262Serine racemase. (834 aa)    
Predicted Functional Partners:
AM587_10004971
NOT transcription complex subunit VIP2.
    
 0.996
AM587_10008987
Cell differentiation protein RCD1.
    
 0.996
AM587_10015960
CCR4-NOT transcription complex subunit 1.
    
 0.996
AM587_10006464
CCR4-NOT transcription complex subunit 7.
    
 0.993
AM587_10014604
Pectinesterase.
    
 
 0.976
AM587_10003923
CCR4-NOT transcription complex subunit 4.
   
 0.971
AM587_10016883
ATPase WRNIP1.
   
 0.957
AM587_10017221
CCR4-NOT transcription complex subunit 11.
    
 0.949
AM587_10014701
DEAD-box ATP-dependent RNA helicase 8; Belongs to the DEAD box helicase family.
   
 0.945
AM587_10009044
CCR4-NOT transcription complex subunit 10.
    
 0.915
Your Current Organism:
Phytophthora nicotianae
NCBI taxonomy Id: 4790
Other names: P. nicotianae, buckeye rot agent
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.