STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AM587_10009570Crooked neck protein 1. (740 aa)    
Predicted Functional Partners:
AM587_10008079
Nuclear pore complex protein.
    
 
 0.669
AM587_10008866
Proliferation-associated protein 2G4.
    
   0.622
AM587_10008548
Nuclear pore complex protein Nup54.
    
 
 0.617
AM587_10016907
Ubiquitin carboxyl-terminal hydrolase 12.
    
 
 0.587
AM587_10015487
Ubiquitin carboxyl-terminal hydrolase; Belongs to the peptidase C19 family.
    
 
 0.587
AM587_10002855
Ubiquitin carboxyl-terminal hydrolase 48; Belongs to the peptidase C19 family.
    
 
 0.587
AM587_10012697
Nucleoporin GLE1.
    
 
 0.556
AM587_10005180
Nucleoporin GLE1.
    
 
 0.556
AM587_10007674
Uncharacterized protein.
    
 
 0.538
AM587_10005361
Ubiquitin carboxyl-terminal hydrolase 34; Belongs to the peptidase C19 family.
    
 
 0.529
Your Current Organism:
Phytophthora nicotianae
NCBI taxonomy Id: 4790
Other names: P. nicotianae, buckeye rot agent
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