STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AM587_10005833Pre-mRNA-splicing factor SLU7. (595 aa)    
Predicted Functional Partners:
AM587_10012745
Pre-mRNA-processing factor 17.
   
 0.997
AM587_10010771
Pre-mRNA-splicing factor 18.
  
 0.995
AM587_10013294
Nucampholin.
   
 0.993
AM587_10017507
Pre-mRNA-splicing factor syf2.
   
 0.991
AM587_10013615
Cell division cycle 5 protein.
   
 
 0.987
AM587_10009045
Pre-mRNA-processing-splicing factor 8.
    
 
 0.985
AM587_10017644
FAM32A protein.
   
 0.977
AM587_10007308
U4/U6 small nuclear ribonucleoprotein Prp3.
   
 
 0.969
AM587_10009465
Splicing factor 3B subunit 2.
   
 
 0.965
AM587_10010334
RNA-binding protein 8A.
   
 0.962
Your Current Organism:
Phytophthora nicotianae
NCBI taxonomy Id: 4790
Other names: P. nicotianae, buckeye rot agent
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.