STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AM587_10015539SKP1 protein 20; Belongs to the SKP1 family. (427 aa)    
Predicted Functional Partners:
AM587_10000093
RING-box protein 1.
   
 0.922
AM587_10003061
Uncharacterized protein.
    
 0.907
AM587_10017381
SGT1 A protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Era GTPase family.
   
 
 0.847
AM587_10010728
F-box/WD repeat-containing protein lin-23.
    
 0.839
AM587_10010068
F-box/WD repeat-containing protein 1A.
    
 0.839
AM587_10011532
Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function.
    
 0.837
AM587_10012929
Uncharacterized protein.
    
 
 0.822
AM587_10002864
Lysine-specific demethylase 7B.
    
 0.821
AM587_10014249
Lipase_3 domain-containing protein.
    
 0.819
AM587_10011219
Cullin-1; Belongs to the cullin family.
    
 0.819
Your Current Organism:
Phytophthora nicotianae
NCBI taxonomy Id: 4790
Other names: P. nicotianae, buckeye rot agent
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.