STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AM587_10000092Tetratricopeptide repeat protein 21B. (233 aa)    
Predicted Functional Partners:
AM587_10010793
Intraflagellar Transport Protein.
  
 
 0.852
AM587_10007247
WD repeat protein 35.
  
 
 0.831
AM587_10006006
Intraflagellar Transport Protein.
  
 0.802
AM587_10015900
Uncharacterized protein.
    
 0.653
AM587_10006655
Intraflagellar Transport Protein 52.
  
 
 0.630
AM587_10016239
Lap4 protein.
    
 0.612
AM587_10001456
WD repeat-containing protein 19.
    
  0.594
AM587_10000004
WD repeat-containing protein 19.
    
  0.594
AM587_10000608
WD repeat-containing protein 19.
    
  0.594
AM587_10003300
WD repeat-containing protein 19.
    
  0.594
Your Current Organism:
Phytophthora nicotianae
NCBI taxonomy Id: 4790
Other names: P. nicotianae, buckeye rot agent
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.