STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AM587_10015002Presequence protease. (1053 aa)    
Predicted Functional Partners:
AM587_10014777
Pyruvate dehydrogenase E1 component subunit alpha; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).
    
   0.778
AM587_10013144
ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.
    
  0.654
AM587_10011938
Pyruvate dehydrogenase E1 component subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
    
   0.652
AM587_10005097
Chaperonin CPN60-1; Belongs to the chaperonin (HSP60) family.
   
  0.649
AM587_10012642
Frataxin.
     
 0.642
AM587_10017495
Pumilio 1.
    
   0.565
AM587_10015550
Xaa-Pro aminopeptidase P; Belongs to the peptidase M24B family.
   
 
 0.526
AM587_10009793
Xaa-Pro dipeptidase.
    
 
 0.522
AM587_10014683
Uncharacterized protein.
    
 
 0.515
AM587_10016960
Uncharacterized protein.
    
  0.515
Your Current Organism:
Phytophthora nicotianae
NCBI taxonomy Id: 4790
Other names: P. nicotianae, buckeye rot agent
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