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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALX93681.1Lysine 6-monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (441 aa)    
Predicted Functional Partners:
ALX93683.1
Hydroxylysine acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
ALX93682.1
Aerobactin synthase IucC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.987
ALX93684.1
Aerobactin synthase IucA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.980
ALX96764.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 
 0.864
ALX96152.1
Antibiotic synthesis protein MbtH; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.858
ALX93680.1
Ligand-gated channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.800
ALX96562.1
Multidrug transporter membrane component/ATP-binding component; Efflux pump for the antibacterial peptide microcin J25; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.741
ALX93686.1
Iron utilization protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.676
ALX93666.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.667
entF
Non-ribosomal peptide synthetase; With EntB, EntD, and EntE forms the multienzyme complex enterobactin synthase; EntF is the serine activating enzyme which catalyzes the formation of the amide and ester bonds of the cyclic enterobactin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.667
Your Current Organism:
Serratia fonticola
NCBI taxonomy Id: 47917
Other names: ATCC 29844, CCUG 14186, CCUG 37824, CCUG 57457 [[Serratia glossinae]], CIP 78.64, DSM 22080 [[Serratia glossinae]], DSM 4576, LMG 7882, LMG:7882, NBRC 102597, NCTC 12965, S. fonticola, Serratia glossinae, Serratia glossinae Geiger et al. 2010, strain 11, strain C1 [[Serratia glossinae]]
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