STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Namu_0342PFAM: FAD dependent oxidoreductase; amine oxidase; KEGG: scl:sce3770 putative phytoene dehydrogenase- related protein. (531 aa)    
Predicted Functional Partners:
Namu_0343
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: scl:sce0047 putative 3-oxoacyl-[acyl-carrier- protein] reductase.
 
   
 0.818
Namu_2501
PFAM: Squalene/phytoene synthase; KEGG: hypothetical protein; K02291 phytoene synthase.
 
  
 0.734
Namu_2441
Hypothetical protein.
 
    0.675
Namu_0344
PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: pzu:PHZ_c1058 glutathione-dependent formaldehyde dehydrogenase.
 
  
 0.571
Namu_0159
KEGG: rso:RS03742 chelatase protein; PFAM: von Willebrand factor type A; ATPase associated with various cellular activities AAA_5; SMART: von Willebrand factor type A; AAA ATPase.
  
  
 0.461
Namu_5325
Hypothetical protein.
 
     0.403
Namu_4823
PFAM: UDP-glucuronosyl/UDP-glucosyltransferase; Glycosyltransferase 28 domain; KEGG: cak:Caul_2842 glycosyl transferase family protein.
 
   
 0.402
Your Current Organism:
Nakamurella multipartita
NCBI taxonomy Id: 479431
Other names: N. multipartita DSM 44233, Nakamurella multipartita DSM 44233, Nakamurella multipartita str. DSM 44233, Nakamurella multipartita strain DSM 44233
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