STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Namu_0625PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: mxa:MXAN_0865 short chain dehydrogenase/reductase family oxidoreductase. (326 aa)    
Predicted Functional Partners:
Namu_0626
PFAM: NADP oxidoreductase coenzyme F420-dependent; KEGG: tau:Tola_1641 NADP oxidoreductase coenzyme F420-dependent.
 
     0.809
Namu_3885
PFAM: Acyl transferase; phosphopantetheine-binding; KEGG: bmj:BMULJ_01287 putative acyl transferase.
 
 
 0.639
Namu_4237
PFAM: Beta-ketoacyl synthase; Beta-hydroxyacyl- (acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: sde:Sde_0689 polyketide synthase modules and related proteins-like; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
 
 0.637
Namu_0627
PFAM: regulatory protein TetR; KEGG: ank:AnaeK_0239 transcriptional regulator, TetR family.
       0.549
Namu_2038
PFAM: Beta-ketoacyl synthase; KEGG: ade:Adeh_2746 3-oxoacyl-[acyl-carrier- protein] synthase II; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
 
 0.519
Namu_4238
KEGG: scl:sce0819 polyketide synthase; TIGRFAM: polyketide-type polyunsaturated fatty acid synthase PfaA; PFAM: Beta-ketoacyl synthase; KR domain protein; Acyl transferase; short-chain dehydrogenase/reductase SDR.
 
 
 0.469
Namu_1740
Hypothetical protein; KEGG: lpc:LPC_1054 putative secreted protein.
  
 
 0.456
Namu_0286
PFAM: cytochrome P450; KEGG: mxa:MXAN_2304 cytochrome P450 family protein.
  
   0.430
Namu_2176
TIGRFAM: 1-phosphofructokinase; PFAM: PfkB domain protein; KEGG: pzu:PHZ_c0451 putative 6-phosphofructokinase; Belongs to the carbohydrate kinase PfkB family.
  
  
 0.421
Namu_3537
KEGG: hypothetical protein.
  
    0.420
Your Current Organism:
Nakamurella multipartita
NCBI taxonomy Id: 479431
Other names: N. multipartita DSM 44233, Nakamurella multipartita DSM 44233, Nakamurella multipartita str. DSM 44233, Nakamurella multipartita strain DSM 44233
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