STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Namu_0644PFAM: integrase family protein; KEGG: bja:bll4526 site-specific integrase; Belongs to the 'phage' integrase family. (406 aa)    
Predicted Functional Partners:
Namu_0643
TIGRFAM: DNA binding domain protein, excisionase family.
 
     0.946
Namu_0642
PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: hypothetical protein.
       0.732
Namu_0475
TIGRFAM: DNA binding domain protein, excisionase family.
 
     0.723
Namu_0637
Hypothetical protein.
       0.672
Namu_0638
Hypothetical protein.
       0.672
Namu_0639
Hypothetical protein.
       0.672
Namu_0640
Hypothetical protein; KEGG: GJ13031 gene product from transcript GJ13031- RA.
       0.672
Namu_0641
Hypothetical protein; KEGG: bmj:BMULJ_01797 DNA polymerase III gamma and tau subunit.
       0.672
Namu_1973
PFAM: integrase family protein; KEGG: nwi:Nwi_1487 phage integrase; Belongs to the 'phage' integrase family.
 
   
 0.654
Namu_0635
Hypothetical protein.
 
  
 0.619
Your Current Organism:
Nakamurella multipartita
NCBI taxonomy Id: 479431
Other names: N. multipartita DSM 44233, Nakamurella multipartita DSM 44233, Nakamurella multipartita str. DSM 44233, Nakamurella multipartita strain DSM 44233
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.