STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Namu_1312PFAM: basic membrane lipoprotein; KEGG: mes:Meso_3982 basic membrane lipoprotein. (383 aa)    
Predicted Functional Partners:
Namu_1313
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: scl:sce7755 sugar ABC transporter, ATP- binding protein.
 
 
 0.994
Namu_1315
PFAM: inner-membrane translocator; KEGG: cvi:CV_2350 sugar ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.993
Namu_1314
PFAM: inner-membrane translocator; KEGG: scl:sce7757 ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.990
Namu_1316
TIGRFAM: cytidine deaminase; PFAM: CMP/dCMP deaminase zinc-binding; KEGG: similar to Cytidine deaminase; K01489 cytidine deaminase.
 
   
 0.732
Namu_1318
KEGG: afw:Anae109_0662 pyrimidine-nucleoside phosphorylase; TIGRFAM: pyrimidine-nucleoside phosphorylase; PFAM: Pyrimidine nucleoside phosphorylase domain; glycosyl transferase family 3; Glycosyl transferase, family 3-like.
 
   
 0.668
Namu_2105
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rso:RSc2757 L-arabinose transporter ATP- binding protein.
 
     0.538
Namu_3430
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rhi:NGR_b04370 ribose ABC transporter, ATP- binding protein.
 
     0.525
psuG
Indigoidine synthase A family protein; Catalyzes the reversible cleavage of pseudouridine 5'- phosphate (PsiMP) to ribose 5-phosphate and uracil. Functions biologically in the cleavage direction, as part of a pseudouridine degradation pathway; Belongs to the pseudouridine-5'-phosphate glycosidase family.
 
     0.517
Namu_1534
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bgl:bglu_2g18470 ABC transporter related protein.
 
     0.486
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
     
 0.442
Your Current Organism:
Nakamurella multipartita
NCBI taxonomy Id: 479431
Other names: N. multipartita DSM 44233, Nakamurella multipartita DSM 44233, Nakamurella multipartita str. DSM 44233, Nakamurella multipartita strain DSM 44233
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