STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Namu_2035PFAM: glycoside hydrolase family 3 domain protein; KEGG: ank:AnaeK_4399 glycoside hydrolase family 3 domain protein. (490 aa)    
Predicted Functional Partners:
Namu_3182
Hypothetical protein; KEGG: cvi:CV_2935 chitinase A.
   
 
 0.906
Namu_3209
Chitinase; KEGG: bps:BPSL1763 putative exported chitinase; PFAM: Carbohydrate-binding family V/XII; SMART: Carbohydrate-binding family V/XII.
     
 0.904
Namu_2034
Hypothetical protein.
       0.752
Namu_0961
KEGG: smt:Smal_3421 N-acetylglucosamine-6-phosphate deacetylase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase.
  
  
 0.660
Namu_0814
PFAM: beta-lactamase; KEGG: met:M446_5348 beta-lactamase.
  
 0.519
Namu_2033
Hypothetical protein.
       0.519
Namu_5081
PFAM: beta-lactamase; KEGG: scl:sce6437 hypothetical protein.
 
  
 0.488
Namu_2650
PFAM: beta-lactamase; KEGG: pzu:PHZ_c0755 beta-lactamase.
 
  
 0.487
Namu_4909
PFAM: VanW family protein; KEGG: scl:sce7395 putative secreted protein.
     
 0.480
Namu_0890
TIGRFAM: PTS system, beta-glucoside-specific IIABC subunit; PTS system, glucose subfamily, IIA subunit; PFAM: sugar-specific permease EIIA 1 domain; phosphotransferase system EIIC; phosphotransferase system PTS EIIB protein; KEGG: kpn:KPN_02578 beta-glucoside-specific PTS system components IIABC.
  
  
 0.473
Your Current Organism:
Nakamurella multipartita
NCBI taxonomy Id: 479431
Other names: N. multipartita DSM 44233, Nakamurella multipartita DSM 44233, Nakamurella multipartita str. DSM 44233, Nakamurella multipartita strain DSM 44233
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