STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Namu_2219KEGG: msl:Msil_0203 hypothetical protein. (309 aa)    
Predicted Functional Partners:
Namu_4412
PFAM: protein of unknown function DUF190; KEGG: dvm:DvMF_0462 protein of unknown function DUF190.
  
     0.556
Namu_2218
PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: mpt:Mpe_B0604 esterase/lipase-like protein.
       0.548
Namu_4900
KEGG: mno:Mnod_3161 hypothetical protein.
  
     0.536
Namu_2217
PFAM: UspA domain protein; KEGG: hypothetical protein.
       0.512
Namu_0505
PFAM: Antibiotic biosynthesis monooxygenase; KEGG: bja:blr3881 hypothetical protein.
  
     0.502
Namu_0379
PFAM: permease; KEGG: bph:Bphy_2044 permease.
  
     0.492
Namu_4831
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: afw:Anae109_1227 endonuclease/exonuclease/phosphatase.
  
     0.467
Namu_1157
Hypothetical protein; KEGG: met:M446_6178 lysine exporter protein LysE/YggA.
  
     0.456
rpsO
Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
       0.453
Namu_1733
PFAM: regulatory protein TetR; KEGG: mlo:mlr3851 TetR family transcriptional regulator.
  
     0.445
Your Current Organism:
Nakamurella multipartita
NCBI taxonomy Id: 479431
Other names: N. multipartita DSM 44233, Nakamurella multipartita DSM 44233, Nakamurella multipartita str. DSM 44233, Nakamurella multipartita strain DSM 44233
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