STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Namu_2351PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bra:BRADO6919 putative short-chain dehydrogenase/reductase (SDR). (268 aa)    
Predicted Functional Partners:
Namu_0774
Hypothetical protein.
  
   
 0.704
Namu_0775
PFAM: Radical SAM domain protein; KEGG: gur:Gura_3559 radical SAM domain-containing protein.
  
   
 0.701
Namu_2350
PFAM: regulatory protein TetR; KEGG: scl:sce6308 TetR family transcriptional regulator.
 
     0.695
Namu_2352
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: hch:HCH_02028 short-chain alcohol dehydrogenase-like protein.
 
    
0.667
Namu_2355
PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; KEGG: scl:sce8131 hypothetical protein.
  
     0.666
Namu_3844
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: smd:Smed_3570 short-chain dehydrogenase/reductase SDR.
  
     0.625
Namu_3885
PFAM: Acyl transferase; phosphopantetheine-binding; KEGG: bmj:BMULJ_01287 putative acyl transferase.
 
 
 0.621
Namu_4237
PFAM: Beta-ketoacyl synthase; Beta-hydroxyacyl- (acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: sde:Sde_0689 polyketide synthase modules and related proteins-like; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
  
 
 0.590
Namu_0770
PFAM: glycosyl transferase family 2; KEGG: gur:Gura_3553 glycosyl transferase family protein.
  
     0.548
Namu_2038
PFAM: Beta-ketoacyl synthase; KEGG: ade:Adeh_2746 3-oxoacyl-[acyl-carrier- protein] synthase II; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
 
 0.530
Your Current Organism:
Nakamurella multipartita
NCBI taxonomy Id: 479431
Other names: N. multipartita DSM 44233, Nakamurella multipartita DSM 44233, Nakamurella multipartita str. DSM 44233, Nakamurella multipartita strain DSM 44233
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