STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Namu_2439PFAM: Luciferase-like monooxygenase; KEGG: sml:Smlt2638 putative dehydrogenase. (322 aa)    
Predicted Functional Partners:
Namu_4175
TIGRFAM: LPPG domain protein containing protein; PFAM: protein of unknown function UPF0052 and CofD; KEGG: oca:OCAR_5005 lppg:fo 2-phospho-L-lactate transferase.
 
   
 0.755
Namu_0885
Hypothetical protein.
  
   
 0.706
Namu_4176
TIGRFAM: F420-dependent oxidoreductase; PFAM: protein of unknown function DUF129; nitroreductase; KEGG: rpb:RPB_4408 hypothetical protein.
 
  
 0.702
Namu_0190
Coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase-like protein; KEGG: bxe:Bxe_B2634 alkanesulfonate monooxygenase.
  
     0.698
Namu_2620
Hypothetical protein.
  
   
 0.688
Namu_1652
PFAM: Luciferase-like monooxygenase; KEGG: rpb:RPB_4411 luciferase-like.
  
     0.672
Namu_3538
PFAM: protein of unknown function DUF121; KEGG: rpb:RPB_4422 hypothetical protein.
 
   
 0.668
Namu_2440
Two component transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: dar:Daro_0834 LuxR response regulator receiver.
   
   0.584
Namu_2438
Flavodoxin-like protein; KEGG: saz:Sama_2882 protoporphyrinogen oxidase.
       0.510
Namu_4262
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: pzu:PHZ_c2536 hypothetical protein.
 
  
 0.465
Your Current Organism:
Nakamurella multipartita
NCBI taxonomy Id: 479431
Other names: N. multipartita DSM 44233, Nakamurella multipartita DSM 44233, Nakamurella multipartita str. DSM 44233, Nakamurella multipartita strain DSM 44233
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