STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Namu_3200PFAM: polysaccharide deacetylase; KEGG: CG31439 gene product from transcript CG31439- RA. (594 aa)    
Predicted Functional Partners:
Namu_3201
Hypothetical protein; KEGG: bra:BRADO4752 glycosidase; Belongs to the glycosyl hydrolase 26 family.
     
 0.539
Namu_1834
PFAM: glycosyl transferase family 2; KEGG: cti:RALTA_B1861 glycosyl transferase; catalytic subunit [UDP-forming]of cellulose synthase.
  
  
 0.492
Namu_2496
PFAM: glycosyl transferase family 2; KEGG: mpo:Mpop_3630 glycosyl transferase family 2.
  
  
 0.492
Namu_3183
PFAM: glycosyl transferase family 2; KEGG: scl:sce1548 glycosyltransferase.
  
  
 0.492
Namu_3210
Glycosyltransferase probably involved in cell wall biogenesis-like protein; KEGG: rsq:Rsph17025_0962 cellulose synthase (UDP- forming).
  
  
 0.492
Namu_3270
PFAM: glycosyl transferase family 2; KEGG: bgl:bglu_1g14900 glycosyl transferase, family 2.
  
  
 0.492
Namu_4194
PFAM: glycosyl transferase family 2; KEGG: sse:Ssed_3009 glycosyl transferase family protein.
  
  
 0.492
Namu_3199
PFAM: Polyprenyl synthetase; KEGG: scl:sce4204 geranyltranstransferase; Belongs to the FPP/GGPP synthase family.
       0.464
Namu_4697
PFAM: glycosyl transferase family 39; KEGG: rme:Rmet_4587 glycosyl transferase, family 39.
  
  
 0.454
Your Current Organism:
Nakamurella multipartita
NCBI taxonomy Id: 479431
Other names: N. multipartita DSM 44233, Nakamurella multipartita DSM 44233, Nakamurella multipartita str. DSM 44233, Nakamurella multipartita strain DSM 44233
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